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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia

Olusola Olagoke, Xinhe Zheng, Seongwon Chung, Hiwot Degineh Mengistie, Kaleb Asfaha, Timothy D Read, Deborah Dean

Functional Genomics Reveals TNT Bioremediation Strategies in Pantoea sp. MT58 and Pseudomonas putida KT2440

Audrey Liwen Wang, Thomas Eng, Alex Rivier, Saad Naseem, Alex Codik, Yan Chen, Aparajitha Srinivasan, Harshini Mukundan, Susannah G Tringe, Christopher J Petzold, Kara L Nelson, Adam M Deutschbauer, Aindrila Mukhopadhyay

A Monovalent SMAC Mimetic as a Potential Host-Directed Therapy for Tuberculosis

Jiahong Ji, Xiaoyi Jiang, Xinlei Liao, Fengjiao Du, Guirong Wang, Hairong Huang, Miao Mei, Yuan He, Xu Tan, Babak Javid, Hao Li

Childhood immune imprinting shapes cohort and period influenza mortality

Kylee A Hoffman, Chadi M Saad-Roy, Ayesha S Mahmud

Examining the effect of neighborhood sanitation coverage on childhood diarrheal disease in rural Bangladesh

Hannah Van Wyk, Andrew F Brouwer, Jesse Contreras, Mahbubur Rahman, Mahfuza Islam, Amy J Pickering, Benjamin F Arnold, Stephen P Luby, John M Colford, Matthew Freeman, Ayse Ercumen, Joseph NS Eisenberg

Non‐cognate CD8 Binding to MHC I Promotes Positive Selection of an MHC‐E Restricted CD8 T Cell Population

Xiaokun Yang, Melissa A Colden, Rachel Coombs, Kathya Arana, Dan Tran, Michael Manoharan Valerio, Ellen A Robey, Laurent Coscoy

Harnessing evolution: leveraging bacterial isoprenoid pathway diversity toward improved bioengineering strategies

Christine M. Qabar, Bailey A. Marshall, Robert Landick, Jeffery S. Cox

Using Wastewater Surveillance to Improve Infectious Disease Control in Correctional Facilities and Congregate Living Settings: A Modeling Perspective

Daniel de-la-Rosa-Martinez, Kara L Nelson, Joyce Lee, Rose S Kantor, Ashley Hazel, Seth Blumberg

Invasive Pneumococcal Disease among Childbearing-Age Women, United States, 2007–2023

Namrata Prasad, Sopio Chochua, Bridget J Anderson, Kathy M Angeles, Meghan Barnes, Lee H Harrison, Corinne Holtzman, Jessica R Howard-Anderson, Shannon O’Brien, Susan Petit, Arthur Reingold, William Schaffner, Lesley McGee, Adam L Cohen, Miwako Kobayashi

Global population structures and demographic history of Suillus luteus, a pine co‐introduced ectomycorrhizal fungus associated with exotic forestry and invasion

Yi‐Hong Ke, Anna Bazzicalupo, Joske Ruytinx, Lotus Lofgren, Thomas Bruns, Sara Branco, Brian Looney, Dai Hirose, Leho Tedersoo, Ursula Peintner, J Alejandro Rojas, Hui‐Ling Liao, Jonathan M Plett, Ian C Anderson, Anna Lipzen, Alan Kuo, Kerrie Barry, Igor Grigoriev, Jason D Hoeksema, Peter G Kennedy, Nhu H Nguyen, Rytas Vilgalys

[HTML] from nature.com Get it at UC Co-speciation and host-switching drives diversity of picornaviruses and sapoviruses in Malagasy fruit bats

Gwenddolen Kettenburg, Hafaliana C Ranaivoson, Angelo Andrianiaina, Santino Andry, Amy R Henry, Rachel L Davis, Farida Laboune, Elizabeth R Longtine, Sucheta Godbole, Sophia Horigan, Emily Cornelius Ruhs, Vololoniaina Raharinosy, Tsiry Hasina Randriambolamanantsoa, Vincent Lacoste, Jean-Michel Heraud, Philippe Dussart, Daniel C Douek, Cara E Brook

Cross-variant immune shield: computational multiepitope vaccine design against B. 617.2 to Omicron sub-lineages in SARS-CoV-2

Jinal M Thakor, Unnati V Panchal, Dhaval Patel, Slawomir Filipek, Urszula Orzeł, Ramasamy Paulmurugan, Katja Hanack, Dorian Liepmann, Venkatesan Renugopalakrishnan, Chaitanya G Joshi, Madhvi Joshi

Identification of proteins influencing CRISPR-associated transposases for enhanced genome editing

Leo CT Song, Amanda TP Alker, Agnès Oromí-Bosch, Sophia E Swartz, Jonathan NV Martinson, Jigyasa Arora, Abby M Wang, Rachel Rovinsky, Sara J Smith, Emily C Pierce, Adam M Deutschbauer, Jennifer A Doudna, Brady F Cress, Benjamin E Rubin

Structural Characterization and AI‐Enhanced Modeling of a Broadly Neutralizing Camelid Antibody Against SARS‐CoV‐2 Variants

Katja Hanack, Urszula Orzeł, Anja Schlör, Sourabh Mehta, Anandi Krishnan, Slawomir Filipek, Rushika Patel, Madhvi Joshi, Markus Hoffmann, Stefan Pöhlmann, Chaitanya Joshi, Dorian Liepmann, Ramasamy Paulmurugan, Venkatesan Renugopalakrishnan

Target cell tension regulates macrophage trogocytosis [Pre-print]

Daniel Fletcher, Caitlin Cornell, Aymeric Chorlay, Deepak Krishnamurthy, Nicholas Martin, Lucia Baldauf

Rainfall and temperature influence effectiveness of on-site sanitation intervention against E. coli contamination in Bangladeshi households

Caitlin G Niven, Mahfuza Islam, Anna Nguyen, Andrew Mertens, Amy J Pickering, Laura H Kwong, Mahfuja Alam, Debashis Sen, Sharmin Islam, Mahbubur Rahman, Leanne Unicomb, Alan E Hubbard, Stephen P Luby, Jessica A Grembi, John M Colford Jr, Benjamin F Arnold, Jade Benjamin-Chung, Ayse Ercumen

Multiple roads lead to Rome: B cell imprinting in distinct sequential flavivirus infections reveals different pathways to acquiring virus-neutralizing antibodies 4434

Tulika Singh, Sandra Bos, Gerald Vásquez Alemán, Tiffany Kim, Miriam Walter, Nharae Lee, Elias Duarte, Aaron Graber, Amir Balakhmet, José Victor Zambrana, Jorge Ruiz Salinas, Federico Narvaez, Angel Balmaseda, Eun-Young Kim, Steven Wolinsky, Eva Harris

Longitudinal single cell multi-omic profiling of Nicaraguan children reveals trajectories of pediatric immune development and variation 2840

Leon Bichmann, Nicholas Rachmaninoff, Stephen Popper, Neha Bansal, Galina Koroleva, Can Liu, Andrew Martins, Lionel Gresh, Jose Victor Zambrana, Aubree Gordon, Philip Johnson, Guillermina Kuan, Angel Balmaseda, Eva Harris, John Tsang

Diverse infection models demonstrate robust resistance of Mycobacterium tuberculosis to innate immunity [Pre-print]

Marian R Fairgrieve, Ella C Brydon, Roberto A Chavez, Dmitri I Kotov, Russell E Vance