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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

Phage-based microbiome manipulation reveals ecological interactions within gut communities

Taylor H Nguyen, Morgan Su, Nhien T Lu, Valentine Trotter, Saria A McKeithen-Mead, Jamie Alcira Lopez, Jiawei Sun, Zachary Hallberg, Handuo Shi, Po-Yi Ho, Brian C DeFelice, Michiko E Taga, Adam M Deutschbauer, Andrew J Hryckowian, Kerwyn Casey Huang

A bidirectional nanAKE locus enables sialic acid catabolism in gut microbiome member Hungatella hathewayi

Vienvilay Phandanouvong-Lozano, Letizia Pastore, Gabriel Miller, Kathryn Y Lin, Ashley R Wolf

Cas9+ conditionally immortalized neutrophil progenitors as a tool for genome-wide CRISPR screening for neutrophil differentiation and function

Robyn M Jong, Krystal L Ching, Nicholas E Garelis, Alex Zilinskas, Xammy Huu Wrynla, Sagar Rawal, Bianca C Hill, Bridget A Luckie, Lillian Shallow, Jeffery S Cox, Gregory M Barton, Sarah A Stanley

Extensive cryptic circulation sustains mpox among men who have sex with men

Joseph A. Lewnard, Miguel I. Paredes, Matan Yechezkel, Gregg S. Davis, Vennis Hong, Jessica Skela, Utsav Pandey, Noah T. Parker, Lauren C. Granskog, Magdalena E. Pomichowski, Iris Anne C. Reyes, Isabel Rodriguez-Barraquer, Nicola F. Müller, Sara Y. Tartof 
 

SmileyLlama: modifying large language models for directed chemical space exploration

Joseph M Cavanagh, Kunyang Sun, Andrew Gritsevskiy, Dorian Bagni, Yingze Wang, Thomas D Bannister, Teresa Head-Gordon

Localized heme sensing through a ternary molecular glue

Michael Heider, Clara Hipp, Zhi Yang, Han Xiao, Tobias Beschauner, Eddie Wehri, Wencke Walter, Rumi Sherriff, Srividya Chandrasekhar, Torsten Haferlach, Julia Schaletzky, Michael Rape

Low-dose Inorganic Arsenic Exposure Reprograms Macrophages Differentiation and Function Toward Tumor-promoting Phenotypes

Emily J Illingworth, Sylvia S Sanchez, Kristal A Rychlik, Andre Kleensang, Jason Laird, Gabriel A Lopez-Cecetaite, M Carolina Rodriguez Steube, Aakriti Mathur, Pritam Sadhukhan, Daniel A Medina-Cleghorn, Daniel Nomura, Martyn T Smith, Mohammad O Hoque, Fenna CM Sillé

Epidemiological impacts of nonpharmaceutical interventions are modulated by immunity exposure trade offs

Chadi M Saad-Roy, Bjarke Frost Nielsen, Margaret L Lind, Caroline E Wagner, Arne Traulsen, C Jessica E Metcalf, Mike Boots, Derek AT Cummings, Bryan T Grenfell

Nominating Genetically Driven Immune Disease Genes for BEACONS: The First US Multistate Genomic Newborn Screening Initiative

Xiao P Peng, Matthew J Kan, Jennifer M Puck, Joshua Milner, Britt Johnson, Rebecca Marsh, Roshini Abraham, Ivona Aksentijevich, Charles J Billington Jr, Manish J Butte, Scott Canna, Shanmuganathan Chandrakasan, Samuel Cern Cher Chiang, Ottavia M Delmonte, Raphaela Goldbach-Mansky, Eyal Grunebaum, Rebecca Hale, Maleewan Kitcharoensakkul, Craig Platt, Daniella Schwartz, Christine M Seroogy, Kathleen Sullivan, Teresa Tarrant, Hannie Zomer, Amber Begtrup, Steven E Brenner, Stephanie A Coury, Dalia Kasperaviciute, Thomas Minton, Harini Somanchi, Jay R Thiagarajah, Carrie Blout Zawatsky, Rebekah Zimmerman, Ingrid Holm, Melissa Wasserstein, Robert Green, Nina Gold

Advances in Protein Function Prediction from the Fifth CAFA Challenge

M Clara De Paolis Kaluza, Rashika Ramola, Parnal Joshi, Damiano Piovesan, Walter Reade, Sandra Orchard, Maria J Martin, Alex Ignatchenko, Kaggle Competition Participants, Burkhard Rost, Christine A Orengo, Marc Robinson-Rechavi, Dannie Durand, Steven E Brenner, Casey S Greene, Sean D Mooney, Iddo Friedberg, Predrag Radivojac

Economic costs of TB and HIV in high-TB-burden countries

Manuel Barron, Stefano Bertozzi, Paul Gertler

Changing COVID-19 vaccine eligibility could reshape disease burden for all

Soren L Larsen, Pamela P Martinez, Ayesha S Mahmud

Bridge recombinase enables versatile rewriting of bacterial genomes

Jaymin Patel, Sophia E. Swartz, Agnes Oromi-Bosch, Liana Yong, Zachary W. LaTurner, Jack E. Demaray, Angela Voelker, Ryuichi Ono, Patrick Vu, Preeti Rao, Hannah Luskin, Pia Andrade, Michael L. Cui, Givi Mchedlishvili, Madeline M. Hayes, Natalie Aluwihare, Carlos E. Iglesias-Aguirre, Emma C. MacKenzie, Cynthia I. Rodriguez, Suzanne Devkota, Spencer Diamond, Brady F.​​​​​​​​​​​​​​​​ Cress

Double-edged sword: flavivirus NS1 enhances human plasmin-mediated fibrinolysis while being targeted for cleavage and inactivation

Lucas Mendes-Monteiro, Pedro Henrique Carneiro, Jonas N. Conde, Joice L. Menezes, Matheus Silva de Souza, Pedro F. de Carvalho, Eugenio D. Hottz, Eva Harris, Diego Allonso, Ronaldo Mohana-Borges

In-line chlorination for drinking water in rural Odisha, India: A randomized controlled implementation trial

Jeremy Lowe, Vaishnavi Prathap, Akito Kamei, Sidhartha Giri, Krushna Chandra Sahoo, Michael Kremer, Elisa M Maffioli, Amy J. Pickering

Abundance of the vector Aedes aegypti in urban and rural areas in Managua, Nicaragua

Harold Suazo-Laguna, Jacqueline Mojica-Díaz, María M Lopez, Angel Balmaseda, Eva Harris, Josefina Coloma, Jose G Juarez

Prevalence of Long COVID in Mycobacterium tuberculosis-exposed groups

Ariana R Cardenas-Jara, Asiko Ongaya, Clement Shiluli, Lourdes B Ramos, Liz C Senador, Juan A Flores, Bernard N Kanoi, Josephine F Reijneveld, Angel Ruvalcaba, Danny Perez, Paul Waiganjo, Cecilia S Lindestam-Arlehamn, Timothy J Henrich, Michael J Peluso, Segundo R Leon, Jesse Gitaka, Sara Suliman